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Query Sample
Upload query sample file:
Dataset:
SwissProt 51
PDB Select 25
Surface residues
DisProt 3.4
Background Sample
Upload background sample file:
Dataset:
SwissProt 51
PDB Select 25
Surface residues
DisProt 3.4
General Options
Bootstrap iterations:
500
1,000
5,000
10,000
50,000
100,000
Significance (α) value:
0.005
0.01
0.05
0.1
0.5
Bonferroni correction:
Output Options
Output format:
GIF (bitmap)
PNG (bitmap)
EPS (vector)
PDF (vector)
TXT (raw values)
Ordering:
Alphabetical
Alpha helix frequency (Nagano)
By observed differences
Beta structure frequency (Nagano)
Bulkiness (Zimmerman)
Coil propensity (Nagano)
Flexibility (Vihinen)
Hydrophobicity (Eisenberg)
Hydrophobicity (Kyte-Doolittle)
Hydrophobicity (Fauchere-Pliska)
Interface propensity (Jones-Thornton)
Linker propensity (George-Heringa)
Polarity (Zimmerman)
Size (Dawson)
Surface exposure (Janin)
Solvation potential (Jones-Thornton)
Output size:
X
cm
inches
pixels
points
Color scheme:
Alpha helix frequency (N)
Amino color scheme
Aromatics
Beta structure frequency (N)
Black and white
Bulkiness (Z)
Charge
Coil propensity (N)
Disorder propensity (D)
Flexibility
Hydrophobicity (E)
Hydrophobicity (K-D)
Hydrophobicity (F-P)
Interface propensity (J-T)
Linker propensity (G-H)
Polarity (Z)
Shapley color scheme
Size (D)
Surface exposure (J)
Solvation potential (J-T)
Weblogo color scheme
Antialias bitmaps:
Y-axis label:
Bitmap resolution:
pixels/cm
pixels/inch (dpi)
pixels/point
